When permissions for shared OneDrive files are not being applied correctly, there are some steps that can be taken to help resolve the issue:

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1. Verify the sharing permissions are correct
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2. Check for any external user access controls
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3. Check the user account permissions on the local computer
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4. Update the sharing URL to the link that matches its permissions
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5. Check the synchronization settings on the local computer
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6. Recheck the sharing settings on the OneDrive
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7. Check if file synchronization is enabled on the OneDrive user account